Package: microhaplot 1.0.2

microhaplot: Microhaplotype Constructor and Visualizer

A downstream bioinformatics tool to construct and assist curation of microhaplotypes from short read sequences.

Authors:Thomas Ng [aut, cre]

microhaplot_1.0.2.tar.gz
microhaplot_1.0.2.zip(r-4.5)microhaplot_1.0.2.zip(r-4.4)microhaplot_1.0.2.zip(r-4.3)
microhaplot_1.0.2.tgz(r-4.5-any)microhaplot_1.0.2.tgz(r-4.4-any)microhaplot_1.0.2.tgz(r-4.3-any)
microhaplot_1.0.2.tar.gz(r-4.5-noble)microhaplot_1.0.2.tar.gz(r-4.4-noble)
microhaplot_1.0.2.tgz(r-4.4-emscripten)microhaplot_1.0.2.tgz(r-4.3-emscripten)
microhaplot.pdf |microhaplot.html✨
microhaplot/json (API)
NEWS

# Install 'microhaplot' in R:
install.packages('microhaplot', repos = c('https://ngthomas.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ngthomas/microhaplot/issues

On CRAN:

Conda:

amplicon-sequencingmicrohaplot-shinyshinyvcf

5.73 score 18 stars 10 scripts 137 downloads 2 mentions 3 exports 76 dependencies

Last updated 4 years agofrom:42c9ed924e. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 18 2025
R-4.5-winNOTEMar 18 2025
R-4.5-macNOTEMar 18 2025
R-4.5-linuxNOTEMar 18 2025
R-4.4-winNOTEMar 18 2025
R-4.4-macNOTEMar 18 2025
R-4.4-linuxNOTEMar 18 2025
R-4.3-winNOTEMar 18 2025
R-4.3-macNOTEMar 18 2025

Exports:mvShinyHaplotprepHaplotFilesrunShinyHaplot

Dependencies:base64encbslibcachemclicolorspacecommonmarkcpp11crayoncrosstalkdigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggiraphggplot2gluegtablegtoolshighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesshinyshinyBSshinyWidgetssourcetoolsstringistringrsystemfontstibbletidyrtidyselecttinytexutf8uuidvctrsviridisLitewithrxfunxtableyaml

An Introduction to microhaplot data preparation

Thomas Ng and Eric C. Anderson

Rendered frommicrohaplot-data-prep.Rmdusingknitr::rmarkdownon Mar 18 2025.

Last update: 2019-05-28
Started: 2019-04-11

microhaplot walkthrough

Thomas Ng and Eric C. Anderson

Rendered frommicrohaplot-walkthrough.Rmdusingknitr::rmarkdownon Mar 18 2025.

Last update: 2019-09-19
Started: 2019-04-04

Package Troubleshoot

Thomas Ng and Eric C. Anderson

Rendered fromtroubleshoot.Rmdusingknitr::rmarkdownon Mar 18 2025.

Last update: 2017-06-30
Started: 2017-06-30